1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
|
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements. See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership. The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not use this file except in compliance
# with the License. You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing,
# software distributed under the License is distributed on an
# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
# KIND, either express or implied. See the License for the
# specific language governing permissions and limitations
# under the License.
# cython: language_level = 3
from pyarrow.lib cimport (check_status, pyarrow_wrap_metadata,
pyarrow_unwrap_metadata)
from pyarrow.lib import frombytes, tobytes, KeyValueMetadata
from pyarrow.includes.common cimport *
from pyarrow.includes.libarrow cimport *
from pyarrow.includes.libarrow_fs cimport *
from pyarrow._fs cimport FileSystem
cpdef enum S3LogLevel:
Off = <int8_t> CS3LogLevel_Off
Fatal = <int8_t> CS3LogLevel_Fatal
Error = <int8_t> CS3LogLevel_Error
Warn = <int8_t> CS3LogLevel_Warn
Info = <int8_t> CS3LogLevel_Info
Debug = <int8_t> CS3LogLevel_Debug
Trace = <int8_t> CS3LogLevel_Trace
def initialize_s3(S3LogLevel log_level=S3LogLevel.Fatal):
"""
Initialize S3 support
Parameters
----------
log_level : S3LogLevel
level of logging
Examples
--------
>>> fs.initialize_s3(fs.S3LogLevel.Error) # doctest: +SKIP
"""
cdef CS3GlobalOptions options
options.log_level = <CS3LogLevel> log_level
check_status(CInitializeS3(options))
def finalize_s3():
check_status(CFinalizeS3())
def resolve_s3_region(bucket):
"""
Resolve the S3 region of a bucket.
Parameters
----------
bucket : str
A S3 bucket name
Returns
-------
region : str
A S3 region name
Examples
--------
>>> fs.resolve_s3_region('voltrondata-labs-datasets')
'us-east-2'
"""
cdef:
c_string c_bucket
c_string c_region
c_bucket = tobytes(bucket)
with nogil:
c_region = GetResultValue(ResolveS3BucketRegion(c_bucket))
return frombytes(c_region)
class S3RetryStrategy:
"""
Base class for AWS retry strategies for use with S3.
Parameters
----------
max_attempts : int, default 3
The maximum number of retry attempts to attempt before failing.
"""
def __init__(self, max_attempts=3):
self.max_attempts = max_attempts
class AwsStandardS3RetryStrategy(S3RetryStrategy):
"""
Represents an AWS Standard retry strategy for use with S3.
Parameters
----------
max_attempts : int, default 3
The maximum number of retry attempts to attempt before failing.
"""
pass
class AwsDefaultS3RetryStrategy(S3RetryStrategy):
"""
Represents an AWS Default retry strategy for use with S3.
Parameters
----------
max_attempts : int, default 3
The maximum number of retry attempts to attempt before failing.
"""
pass
cdef class S3FileSystem(FileSystem):
"""
S3-backed FileSystem implementation
If neither access_key nor secret_key are provided, and role_arn is also not
provided, then attempts to initialize from AWS environment variables,
otherwise both access_key and secret_key must be provided.
If role_arn is provided instead of access_key and secret_key, temporary
credentials will be fetched by issuing a request to STS to assume the
specified role.
Note: S3 buckets are special and the operations available on them may be
limited or more expensive than desired.
When S3FileSystem creates new buckets (assuming allow_bucket_creation is
True), it does not pass any non-default settings. In AWS S3, the bucket and
all objects will be not publicly visible, and will have no bucket policies
and no resource tags. To have more control over how buckets are created,
use a different API to create them.
Parameters
----------
access_key : str, default None
AWS Access Key ID. Pass None to use the standard AWS environment
variables and/or configuration file.
secret_key : str, default None
AWS Secret Access key. Pass None to use the standard AWS environment
variables and/or configuration file.
session_token : str, default None
AWS Session Token. An optional session token, required if access_key
and secret_key are temporary credentials from STS.
anonymous : boolean, default False
Whether to connect anonymously if access_key and secret_key are None.
If true, will not attempt to look up credentials using standard AWS
configuration methods.
role_arn : str, default None
AWS Role ARN. If provided instead of access_key and secret_key,
temporary credentials will be fetched by assuming this role.
session_name : str, default None
An optional identifier for the assumed role session.
external_id : str, default None
An optional unique identifier that might be required when you assume
a role in another account.
load_frequency : int, default 900
The frequency (in seconds) with which temporary credentials from an
assumed role session will be refreshed.
region : str, default None
AWS region to connect to. If not set, the AWS SDK will attempt to
determine the region using heuristics such as environment variables,
configuration profile, EC2 metadata, or default to 'us-east-1' when SDK
version <1.8. One can also use :func:`pyarrow.fs.resolve_s3_region` to
automatically resolve the region from a bucket name.
request_timeout : double, default None
Socket read timeouts on Windows and macOS, in seconds.
If omitted, the AWS SDK default value is used (typically 3 seconds).
This option is ignored on non-Windows, non-macOS systems.
connect_timeout : double, default None
Socket connection timeout, in seconds.
If omitted, the AWS SDK default value is used (typically 1 second).
scheme : str, default 'https'
S3 connection transport scheme.
endpoint_override : str, default None
Override region with a connect string such as "localhost:9000"
background_writes : boolean, default True
Whether file writes will be issued in the background, without
blocking.
default_metadata : mapping or pyarrow.KeyValueMetadata, default None
Default metadata for open_output_stream. This will be ignored if
non-empty metadata is passed to open_output_stream.
proxy_options : dict or str, default None
If a proxy is used, provide the options here. Supported options are:
'scheme' (str: 'http' or 'https'; required), 'host' (str; required),
'port' (int; required), 'username' (str; optional),
'password' (str; optional).
A proxy URI (str) can also be provided, in which case these options
will be derived from the provided URI.
The following are equivalent::
S3FileSystem(proxy_options='http://username:password@localhost:8020')
S3FileSystem(proxy_options={'scheme': 'http', 'host': 'localhost',
'port': 8020, 'username': 'username',
'password': 'password'})
allow_bucket_creation : bool, default False
Whether to allow CreateDir at the bucket-level. This option may also be
passed in a URI query parameter.
allow_bucket_deletion : bool, default False
Whether to allow DeleteDir at the bucket-level. This option may also be
passed in a URI query parameter.
retry_strategy : S3RetryStrategy, default AwsStandardS3RetryStrategy(max_attempts=3)
The retry strategy to use with S3; fail after max_attempts. Available
strategies are AwsStandardS3RetryStrategy, AwsDefaultS3RetryStrategy.
Examples
--------
>>> from pyarrow import fs
>>> s3 = fs.S3FileSystem(region='us-west-2')
>>> s3.get_file_info(fs.FileSelector(
... 'power-analysis-ready-datastore/power_901_constants.zarr/FROCEAN', recursive=True
... ))
[<FileInfo for 'power-analysis-ready-datastore/power_901_constants.zarr/FROCEAN/.zarray...
For usage of the methods see examples for :func:`~pyarrow.fs.LocalFileSystem`.
"""
cdef:
CS3FileSystem* s3fs
def __init__(self, *, access_key=None, secret_key=None, session_token=None,
bint anonymous=False, region=None, request_timeout=None,
connect_timeout=None, scheme=None, endpoint_override=None,
bint background_writes=True, default_metadata=None,
role_arn=None, session_name=None, external_id=None,
load_frequency=900, proxy_options=None,
allow_bucket_creation=False, allow_bucket_deletion=False,
retry_strategy: S3RetryStrategy = AwsStandardS3RetryStrategy(max_attempts=3)):
cdef:
CS3Options options
shared_ptr[CS3FileSystem] wrapped
if access_key is not None and secret_key is None:
raise ValueError(
'In order to initialize with explicit credentials both '
'access_key and secret_key must be provided, '
'`secret_key` is not set.'
)
elif access_key is None and secret_key is not None:
raise ValueError(
'In order to initialize with explicit credentials both '
'access_key and secret_key must be provided, '
'`access_key` is not set.'
)
elif session_token is not None and (access_key is None or
secret_key is None):
raise ValueError(
'In order to initialize a session with temporary credentials, '
'both secret_key and access_key must be provided in addition '
'to session_token.'
)
elif (access_key is not None or secret_key is not None):
if anonymous:
raise ValueError(
'Cannot pass anonymous=True together with access_key '
'and secret_key.')
if role_arn:
raise ValueError(
'Cannot provide role_arn with access_key and secret_key')
if session_token is None:
session_token = ""
options = CS3Options.FromAccessKey(
tobytes(access_key),
tobytes(secret_key),
tobytes(session_token)
)
elif anonymous:
if role_arn:
raise ValueError(
'Cannot provide role_arn with anonymous=True')
options = CS3Options.Anonymous()
elif role_arn:
if session_name is None:
session_name = ''
if external_id is None:
external_id = ''
options = CS3Options.FromAssumeRole(
tobytes(role_arn),
tobytes(session_name),
tobytes(external_id),
load_frequency
)
else:
options = CS3Options.Defaults()
if region is not None:
options.region = tobytes(region)
if request_timeout is not None:
options.request_timeout = request_timeout
if connect_timeout is not None:
options.connect_timeout = connect_timeout
if scheme is not None:
options.scheme = tobytes(scheme)
if endpoint_override is not None:
options.endpoint_override = tobytes(endpoint_override)
if background_writes is not None:
options.background_writes = background_writes
if default_metadata is not None:
if not isinstance(default_metadata, KeyValueMetadata):
default_metadata = KeyValueMetadata(default_metadata)
options.default_metadata = pyarrow_unwrap_metadata(
default_metadata)
if proxy_options is not None:
if isinstance(proxy_options, dict):
options.proxy_options.scheme = tobytes(proxy_options["scheme"])
options.proxy_options.host = tobytes(proxy_options["host"])
options.proxy_options.port = proxy_options["port"]
proxy_username = proxy_options.get("username", None)
if proxy_username:
options.proxy_options.username = tobytes(proxy_username)
proxy_password = proxy_options.get("password", None)
if proxy_password:
options.proxy_options.password = tobytes(proxy_password)
elif isinstance(proxy_options, str):
options.proxy_options = GetResultValue(
CS3ProxyOptions.FromUriString(tobytes(proxy_options)))
else:
raise TypeError(
"'proxy_options': expected 'dict' or 'str', "
f"got {type(proxy_options)} instead.")
options.allow_bucket_creation = allow_bucket_creation
options.allow_bucket_deletion = allow_bucket_deletion
if isinstance(retry_strategy, AwsStandardS3RetryStrategy):
options.retry_strategy = CS3RetryStrategy.GetAwsStandardRetryStrategy(
retry_strategy.max_attempts)
elif isinstance(retry_strategy, AwsDefaultS3RetryStrategy):
options.retry_strategy = CS3RetryStrategy.GetAwsDefaultRetryStrategy(
retry_strategy.max_attempts)
else:
raise ValueError(f'Invalid retry_strategy {retry_strategy!r}')
with nogil:
wrapped = GetResultValue(CS3FileSystem.Make(options))
self.init(<shared_ptr[CFileSystem]> wrapped)
cdef init(self, const shared_ptr[CFileSystem]& wrapped):
FileSystem.init(self, wrapped)
self.s3fs = <CS3FileSystem*> wrapped.get()
@classmethod
def _reconstruct(cls, kwargs):
return cls(**kwargs)
def __reduce__(self):
cdef CS3Options opts = self.s3fs.options()
# if creds were explicitly provided, then use them
# else obtain them as they were last time.
if opts.credentials_kind == CS3CredentialsKind_Explicit:
access_key = frombytes(opts.GetAccessKey())
secret_key = frombytes(opts.GetSecretKey())
session_token = frombytes(opts.GetSessionToken())
else:
access_key = None
secret_key = None
session_token = None
return (
S3FileSystem._reconstruct, (dict(
access_key=access_key,
secret_key=secret_key,
session_token=session_token,
anonymous=(opts.credentials_kind ==
CS3CredentialsKind_Anonymous),
region=frombytes(opts.region),
scheme=frombytes(opts.scheme),
connect_timeout=opts.connect_timeout,
request_timeout=opts.request_timeout,
endpoint_override=frombytes(opts.endpoint_override),
role_arn=frombytes(opts.role_arn),
session_name=frombytes(opts.session_name),
external_id=frombytes(opts.external_id),
load_frequency=opts.load_frequency,
background_writes=opts.background_writes,
allow_bucket_creation=opts.allow_bucket_creation,
allow_bucket_deletion=opts.allow_bucket_deletion,
default_metadata=pyarrow_wrap_metadata(opts.default_metadata),
proxy_options={'scheme': frombytes(opts.proxy_options.scheme),
'host': frombytes(opts.proxy_options.host),
'port': opts.proxy_options.port,
'username': frombytes(
opts.proxy_options.username),
'password': frombytes(
opts.proxy_options.password)},
),)
)
@property
def region(self):
"""
The AWS region this filesystem connects to.
"""
return frombytes(self.s3fs.region())
|