summaryrefslogtreecommitdiffstats
path: root/venv/lib/python3.9/site-packages/pyarrow/serialization.pxi
blob: 41609693d84f03df5d9b8eb1f44abe94e2a5f0a0 (plain) (blame)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
# Licensed to the Apache Software Foundation (ASF) under one
# or more contributor license agreements.  See the NOTICE file
# distributed with this work for additional information
# regarding copyright ownership.  The ASF licenses this file
# to you under the Apache License, Version 2.0 (the
# "License"); you may not use this file except in compliance
# with the License.  You may obtain a copy of the License at
#
#   http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing,
# software distributed under the License is distributed on an
# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
# KIND, either express or implied.  See the License for the
# specific language governing permissions and limitations
# under the License.

from cpython.ref cimport PyObject

import warnings


def _deprecate_serialization(name):
    msg = (
        "'pyarrow.{}' is deprecated as of 2.0.0 and will be removed in a "
        "future version. Use pickle or the pyarrow IPC functionality instead."
    ).format(name)
    warnings.warn(msg, FutureWarning, stacklevel=3)


def is_named_tuple(cls):
    """
    Return True if cls is a namedtuple and False otherwise.
    """
    b = cls.__bases__
    if len(b) != 1 or b[0] != tuple:
        return False
    f = getattr(cls, "_fields", None)
    if not isinstance(f, tuple):
        return False
    return all(isinstance(n, str) for n in f)


class SerializationCallbackError(ArrowSerializationError):
    def __init__(self, message, example_object):
        ArrowSerializationError.__init__(self, message)
        self.example_object = example_object


class DeserializationCallbackError(ArrowSerializationError):
    def __init__(self, message, type_id):
        ArrowSerializationError.__init__(self, message)
        self.type_id = type_id


cdef class SerializationContext(_Weakrefable):
    cdef:
        object type_to_type_id
        object whitelisted_types
        object types_to_pickle
        object custom_serializers
        object custom_deserializers
        object pickle_serializer
        object pickle_deserializer

    def __init__(self):
        # Types with special serialization handlers
        self.type_to_type_id = dict()
        self.whitelisted_types = dict()
        self.types_to_pickle = set()
        self.custom_serializers = dict()
        self.custom_deserializers = dict()
        self.pickle_serializer = pickle.dumps
        self.pickle_deserializer = pickle.loads

    def set_pickle(self, serializer, deserializer):
        """
        Set the serializer and deserializer to use for objects that are to be
        pickled.

        Parameters
        ----------
        serializer : callable
            The serializer to use (e.g., pickle.dumps or cloudpickle.dumps).
        deserializer : callable
            The deserializer to use (e.g., pickle.dumps or cloudpickle.dumps).
        """
        self.pickle_serializer = serializer
        self.pickle_deserializer = deserializer

    def clone(self):
        """
        Return copy of this SerializationContext.

        Returns
        -------
        clone : SerializationContext
        """
        result = SerializationContext()
        result.type_to_type_id = self.type_to_type_id.copy()
        result.whitelisted_types = self.whitelisted_types.copy()
        result.types_to_pickle = self.types_to_pickle.copy()
        result.custom_serializers = self.custom_serializers.copy()
        result.custom_deserializers = self.custom_deserializers.copy()
        result.pickle_serializer = self.pickle_serializer
        result.pickle_deserializer = self.pickle_deserializer

        return result

    def register_type(self, type_, type_id, pickle=False,
                      custom_serializer=None, custom_deserializer=None):
        r"""
        EXPERIMENTAL: Add type to the list of types we can serialize.

        Parameters
        ----------
        type\_ : type
            The type that we can serialize.
        type_id : string
            A string used to identify the type.
        pickle : bool
            True if the serialization should be done with pickle.
            False if it should be done efficiently with Arrow.
        custom_serializer : callable
            This argument is optional, but can be provided to
            serialize objects of the class in a particular way.
        custom_deserializer : callable
            This argument is optional, but can be provided to
            deserialize objects of the class in a particular way.
        """
        if not isinstance(type_id, str):
            raise TypeError("The type_id argument must be a string. The value "
                            "passed in has type {}.".format(type(type_id)))

        self.type_to_type_id[type_] = type_id
        self.whitelisted_types[type_id] = type_
        if pickle:
            self.types_to_pickle.add(type_id)
        if custom_serializer is not None:
            self.custom_serializers[type_id] = custom_serializer
            self.custom_deserializers[type_id] = custom_deserializer

    def _serialize_callback(self, obj):
        found = False
        for type_ in type(obj).__mro__:
            if type_ in self.type_to_type_id:
                found = True
                break

        if not found:
            raise SerializationCallbackError(
                "pyarrow does not know how to "
                "serialize objects of type {}.".format(type(obj)), obj
            )

        # use the closest match to type(obj)
        type_id = self.type_to_type_id[type_]
        if type_id in self.types_to_pickle:
            serialized_obj = {"data": self.pickle_serializer(obj),
                              "pickle": True}
        elif type_id in self.custom_serializers:
            serialized_obj = {"data": self.custom_serializers[type_id](obj)}
        else:
            if is_named_tuple(type_):
                serialized_obj = {}
                serialized_obj["_pa_getnewargs_"] = obj.__getnewargs__()
            elif hasattr(obj, "__dict__"):
                serialized_obj = obj.__dict__
            else:
                msg = "We do not know how to serialize " \
                      "the object '{}'".format(obj)
                raise SerializationCallbackError(msg, obj)
        return dict(serialized_obj, **{"_pytype_": type_id})

    def _deserialize_callback(self, serialized_obj):
        type_id = serialized_obj["_pytype_"]
        if isinstance(type_id, bytes):
            # ARROW-4675: Python 2 serialized, read in Python 3
            type_id = frombytes(type_id)

        if "pickle" in serialized_obj:
            # The object was pickled, so unpickle it.
            obj = self.pickle_deserializer(serialized_obj["data"])
        else:
            assert type_id not in self.types_to_pickle
            if type_id not in self.whitelisted_types:
                msg = "Type ID " + type_id + " not registered in " \
                      "deserialization callback"
                raise DeserializationCallbackError(msg, type_id)
            type_ = self.whitelisted_types[type_id]
            if type_id in self.custom_deserializers:
                obj = self.custom_deserializers[type_id](
                    serialized_obj["data"])
            else:
                # In this case, serialized_obj should just be
                # the __dict__ field.
                if "_pa_getnewargs_" in serialized_obj:
                    obj = type_.__new__(
                        type_, *serialized_obj["_pa_getnewargs_"])
                else:
                    obj = type_.__new__(type_)
                    serialized_obj.pop("_pytype_")
                    obj.__dict__.update(serialized_obj)
        return obj

    def serialize(self, obj):
        """
        Call pyarrow.serialize and pass this SerializationContext.
        """
        return serialize(obj, context=self)

    def serialize_to(self, object value, sink):
        """
        Call pyarrow.serialize_to and pass this SerializationContext.
        """
        return serialize_to(value, sink, context=self)

    def deserialize(self, what):
        """
        Call pyarrow.deserialize and pass this SerializationContext.
        """
        return deserialize(what, context=self)

    def deserialize_components(self, what):
        """
        Call pyarrow.deserialize_components and pass this SerializationContext.
        """
        return deserialize_components(what, context=self)


_default_serialization_context = SerializationContext()
_default_context_initialized = False


def _get_default_context():
    global _default_context_initialized
    from pyarrow.serialization import _register_default_serialization_handlers
    if not _default_context_initialized:
        _register_default_serialization_handlers(
            _default_serialization_context)
        _default_context_initialized = True
    return _default_serialization_context


cdef class SerializedPyObject(_Weakrefable):
    """
    Arrow-serialized representation of Python object.
    """
    cdef:
        CSerializedPyObject data

    cdef readonly:
        object base

    @property
    def total_bytes(self):
        cdef CMockOutputStream mock_stream
        with nogil:
            check_status(self.data.WriteTo(&mock_stream))

        return mock_stream.GetExtentBytesWritten()

    def write_to(self, sink):
        """
        Write serialized object to a sink.
        """
        cdef shared_ptr[COutputStream] stream
        get_writer(sink, &stream)
        self._write_to(stream.get())

    cdef _write_to(self, COutputStream* stream):
        with nogil:
            check_status(self.data.WriteTo(stream))

    def deserialize(self, SerializationContext context=None):
        """
        Convert back to Python object.
        """
        cdef PyObject* result

        if context is None:
            context = _get_default_context()

        with nogil:
            check_status(DeserializeObject(context, self.data,
                                           <PyObject*> self.base, &result))

        # PyObject_to_object is necessary to avoid a memory leak;
        # also unpack the list the object was wrapped in in serialize
        return PyObject_to_object(result)[0]

    def to_buffer(self, nthreads=1):
        """
        Write serialized data as Buffer.
        """
        cdef Buffer output = allocate_buffer(self.total_bytes)
        sink = FixedSizeBufferWriter(output)
        if nthreads > 1:
            sink.set_memcopy_threads(nthreads)
        self.write_to(sink)
        return output

    @staticmethod
    def from_components(components):
        """
        Reconstruct SerializedPyObject from output of
        SerializedPyObject.to_components.
        """
        cdef:
            int num_tensors = components['num_tensors']
            int num_ndarrays = components['num_ndarrays']
            int num_buffers = components['num_buffers']
            list buffers = components['data']
            SparseTensorCounts num_sparse_tensors = SparseTensorCounts()
            SerializedPyObject result = SerializedPyObject()

        num_sparse_tensors.coo = components['num_sparse_tensors']['coo']
        num_sparse_tensors.csr = components['num_sparse_tensors']['csr']
        num_sparse_tensors.csc = components['num_sparse_tensors']['csc']
        num_sparse_tensors.csf = components['num_sparse_tensors']['csf']
        num_sparse_tensors.ndim_csf = \
            components['num_sparse_tensors']['ndim_csf']

        with nogil:
            check_status(GetSerializedFromComponents(num_tensors,
                                                     num_sparse_tensors,
                                                     num_ndarrays,
                                                     num_buffers,
                                                     buffers, &result.data))

        return result

    def to_components(self, memory_pool=None):
        """
        Return the decomposed dict representation of the serialized object
        containing a collection of Buffer objects which maximize opportunities
        for zero-copy.

        Parameters
        ----------
        memory_pool : MemoryPool default None
            Pool to use for necessary allocations.

        Returns

        """
        cdef PyObject* result
        cdef CMemoryPool* c_pool = maybe_unbox_memory_pool(memory_pool)

        with nogil:
            check_status(self.data.GetComponents(c_pool, &result))

        return PyObject_to_object(result)


def serialize(object value, SerializationContext context=None):
    """
    DEPRECATED: Serialize a general Python sequence for transient storage
    and transport.

    .. deprecated:: 2.0
        The custom serialization functionality is deprecated in pyarrow 2.0,
        and will be removed in a future version. Use the standard library
        ``pickle`` or the IPC functionality of pyarrow (see :ref:`ipc` for
        more).

    Notes
    -----
    This function produces data that is incompatible with the standard
    Arrow IPC binary protocol, i.e. it cannot be used with ipc.open_stream or
    ipc.open_file. You can use deserialize, deserialize_from, or
    deserialize_components to read it.

    Parameters
    ----------
    value : object
        Python object for the sequence that is to be serialized.
    context : SerializationContext
        Custom serialization and deserialization context, uses a default
        context with some standard type handlers if not specified.

    Returns
    -------
    serialized : SerializedPyObject

    """
    _deprecate_serialization("serialize")
    return _serialize(value, context)


def _serialize(object value, SerializationContext context=None):
    cdef SerializedPyObject serialized = SerializedPyObject()
    wrapped_value = [value]

    if context is None:
        context = _get_default_context()

    with nogil:
        check_status(SerializeObject(context, wrapped_value, &serialized.data))
    return serialized


def serialize_to(object value, sink, SerializationContext context=None):
    """
    DEPRECATED: Serialize a Python sequence to a file.

    .. deprecated:: 2.0
        The custom serialization functionality is deprecated in pyarrow 2.0,
        and will be removed in a future version. Use the standard library
        ``pickle`` or the IPC functionality of pyarrow (see :ref:`ipc` for
        more).

    Parameters
    ----------
    value : object
        Python object for the sequence that is to be serialized.
    sink : NativeFile or file-like
        File the sequence will be written to.
    context : SerializationContext
        Custom serialization and deserialization context, uses a default
        context with some standard type handlers if not specified.
    """
    _deprecate_serialization("serialize_to")
    serialized = _serialize(value, context)
    serialized.write_to(sink)


def read_serialized(source, base=None):
    """
    DEPRECATED: Read serialized Python sequence from file-like object.

    .. deprecated:: 2.0
        The custom serialization functionality is deprecated in pyarrow 2.0,
        and will be removed in a future version. Use the standard library
        ``pickle`` or the IPC functionality of pyarrow (see :ref:`ipc` for
        more).

    Parameters
    ----------
    source : NativeFile
        File to read the sequence from.
    base : object
        This object will be the base object of all the numpy arrays
        contained in the sequence.

    Returns
    -------
    serialized : the serialized data
    """
    _deprecate_serialization("read_serialized")
    return _read_serialized(source, base=base)


def _read_serialized(source, base=None):
    cdef shared_ptr[CRandomAccessFile] stream
    get_reader(source, False, &stream)

    cdef SerializedPyObject serialized = SerializedPyObject()
    serialized.base = base
    with nogil:
        check_status(ReadSerializedObject(stream.get(), &serialized.data))

    return serialized


def deserialize_from(source, object base, SerializationContext context=None):
    """
    DEPRECATED: Deserialize a Python sequence from a file.

    .. deprecated:: 2.0
        The custom serialization functionality is deprecated in pyarrow 2.0,
        and will be removed in a future version. Use the standard library
        ``pickle`` or the IPC functionality of pyarrow (see :ref:`ipc` for
        more).

    This only can interact with data produced by pyarrow.serialize or
    pyarrow.serialize_to.

    Parameters
    ----------
    source : NativeFile
        File to read the sequence from.
    base : object
        This object will be the base object of all the numpy arrays
        contained in the sequence.
    context : SerializationContext
        Custom serialization and deserialization context.

    Returns
    -------
    object
        Python object for the deserialized sequence.
    """
    _deprecate_serialization("deserialize_from")
    serialized = _read_serialized(source, base=base)
    return serialized.deserialize(context)


def deserialize_components(components, SerializationContext context=None):
    """
    DEPRECATED: Reconstruct Python object from output of
    SerializedPyObject.to_components.

    .. deprecated:: 2.0
        The custom serialization functionality is deprecated in pyarrow 2.0,
        and will be removed in a future version. Use the standard library
        ``pickle`` or the IPC functionality of pyarrow (see :ref:`ipc` for
        more).

    Parameters
    ----------
    components : dict
        Output of SerializedPyObject.to_components
    context : SerializationContext, default None

    Returns
    -------
    object : the Python object that was originally serialized
    """
    _deprecate_serialization("deserialize_components")
    serialized = SerializedPyObject.from_components(components)
    return serialized.deserialize(context)


def deserialize(obj, SerializationContext context=None):
    """
    DEPRECATED: Deserialize Python object from Buffer or other Python
    object supporting the buffer protocol.

    .. deprecated:: 2.0
        The custom serialization functionality is deprecated in pyarrow 2.0,
        and will be removed in a future version. Use the standard library
        ``pickle`` or the IPC functionality of pyarrow (see :ref:`ipc` for
        more).

    This only can interact with data produced by pyarrow.serialize or
    pyarrow.serialize_to.

    Parameters
    ----------
    obj : pyarrow.Buffer or Python object supporting buffer protocol
    context : SerializationContext
        Custom serialization and deserialization context.

    Returns
    -------
    deserialized : object
    """
    _deprecate_serialization("deserialize")
    return _deserialize(obj, context=context)


def _deserialize(obj, SerializationContext context=None):
    source = BufferReader(obj)
    serialized = _read_serialized(source, base=obj)
    return serialized.deserialize(context)