5 files changed, 15 insertions, 5 deletions
diff --git a/src/yuzu_cmd/config.cpp b/src/yuzu_cmd/config.cpp
index 43877fc98..2f984d1b8 100644
--- a/src/yuzu_cmd/config.cpp
+++ b/src/yuzu_cmd/config.cpp
@@ -9,8 +9,8 @@
 #include "common/file_util.h"
 #include "common/logging/log.h"
 #include "common/param_package.h"
+#include "common/settings.h"
 #include "core/hle/service/acc/profile_manager.h"
-#include "core/settings.h"
 #include "input_common/main.h"
 #include "input_common/udp/client.h"
 #include "yuzu_cmd/config.h"
@@ -428,6 +428,10 @@ void Config::ReadValues() {
     Settings::values.reporting_services =
         sdl2_config->GetBoolean("Debugging", "reporting_services", false);
     Settings::values.quest_flag = sdl2_config->GetBoolean("Debugging", "quest_flag", false);
+    Settings::values.use_debug_asserts =
+        sdl2_config->GetBoolean("Debugging", "use_debug_asserts", false);
+    Settings::values.use_auto_stub = sdl2_config->GetBoolean("Debugging", "use_auto_stub", false);
+
     Settings::values.disable_macro_jit =
         sdl2_config->GetBoolean("Debugging", "disable_macro_jit", false);
 
diff --git a/src/yuzu_cmd/default_ini.h b/src/yuzu_cmd/default_ini.h
index 3ee0e037d..4ce8e08e4 100644
--- a/src/yuzu_cmd/default_ini.h
+++ b/src/yuzu_cmd/default_ini.h
@@ -325,6 +325,12 @@ dump_nso=false
 # Determines whether or not yuzu will report to the game that the emulated console is in Kiosk Mode
 # false: Retail/Normal Mode (default), true: Kiosk Mode
 quest_flag =
+# Determines whether debug asserts should be enabled, which will throw an exception on asserts.
+# false: Disabled (default), true: Enabled
+use_debug_asserts =
+# Determines whether unimplemented HLE service calls should be automatically stubbed.
+# false: Disabled (default), true: Enabled
+use_auto_stub =
 # Enables/Disables the macro JIT compiler
 disable_macro_jit=false
 
diff --git a/src/yuzu_cmd/emu_window/emu_window_sdl2_gl.cpp b/src/yuzu_cmd/emu_window/emu_window_sdl2_gl.cpp
index a02485c14..a765fa7b3 100644
--- a/src/yuzu_cmd/emu_window/emu_window_sdl2_gl.cpp
+++ b/src/yuzu_cmd/emu_window/emu_window_sdl2_gl.cpp
@@ -12,9 +12,9 @@
 #include "common/assert.h"
 #include "common/logging/log.h"
 #include "common/scm_rev.h"
+#include "common/settings.h"
 #include "common/string_util.h"
 #include "core/core.h"
-#include "core/settings.h"
 #include "input_common/keyboard.h"
 #include "input_common/main.h"
 #include "video_core/renderer_base.h"
diff --git a/src/yuzu_cmd/emu_window/emu_window_sdl2_vk.cpp b/src/yuzu_cmd/emu_window/emu_window_sdl2_vk.cpp
index 6f9b00461..dfd53e285 100644
--- a/src/yuzu_cmd/emu_window/emu_window_sdl2_vk.cpp
+++ b/src/yuzu_cmd/emu_window/emu_window_sdl2_vk.cpp
@@ -11,7 +11,7 @@
 #include "common/assert.h"
 #include "common/logging/log.h"
 #include "common/scm_rev.h"
-#include "core/settings.h"
+#include "common/settings.h"
 #include "video_core/renderer_vulkan/renderer_vulkan.h"
 #include "yuzu_cmd/emu_window/emu_window_sdl2_vk.h"
 
diff --git a/src/yuzu_cmd/yuzu.cpp b/src/yuzu_cmd/yuzu.cpp
index 982c41785..b431db659 100644
--- a/src/yuzu_cmd/yuzu.cpp
+++ b/src/yuzu_cmd/yuzu.cpp
@@ -20,6 +20,7 @@
 #include "common/nvidia_flags.h"
 #include "common/scm_rev.h"
 #include "common/scope_exit.h"
+#include "common/settings.h"
 #include "common/string_util.h"
 #include "common/telemetry.h"
 #include "core/core.h"
@@ -29,7 +30,6 @@
 #include "core/hle/kernel/process.h"
 #include "core/hle/service/filesystem/filesystem.h"
 #include "core/loader/loader.h"
-#include "core/settings.h"
 #include "core/telemetry_session.h"
 #include "input_common/main.h"
 #include "video_core/renderer_base.h"
@@ -164,7 +164,7 @@ int main(int argc, char** argv) {
     InputCommon::InputSubsystem input_subsystem;
 
     // Apply the command line arguments
-    Settings::Apply(system);
+    system.ApplySettings();
 
     std::unique_ptr<EmuWindow_SDL2> emu_window;
     switch (Settings::values.renderer_backend.GetValue()) {